Global Parameters	Description
-CHEck	Prints a summary of the available command-line parameters and prompts you for any additions you may want to make to the command line.
-Default	Tells the program to suppress all interaction and to use the program's default values for every parameter that is not explicitly defined on the command line.
-DOCLines=6	Sets the number of lines of documentation that Wisconsin Package programs copy from input files to output files. This option sets a program to copy any number of lines you choose. The default is six lines.
-FASTA	Sets a program to accept sequences in FastA format.
-FAITHful	Sets a program to copy all of the input file's documentary heading, including blank lines, into output files.
-INITialize=initialization_file.init	Names the file the program should use as a command-line initialization file (see "Using Command-Line Initialization Files" in the "For Advanced Users" section in Chapter 3 of the User's Guide). If you do not specify the initialization_file.init, the program will use the file with a name the same as the program and the file extension .Init, for example % map -INIT uses the file Map.Init.
-NODOCumentation	Suppresses the short banner that introduces each program.
-QUIet	Sets a program not to ring the terminal bell, even when an error occurs.
-STAden	Sets a program to accept sequences in Staden format.