Global Switch	Description	Complementary Switch
% comcheck	Displays a summary of command-line parameters and displays the prompt "Add what to the command line?" You can type the additional parameters you want at that time.	% nocomcheck
% nobeep % quiet	Turns off the bell-ringing function of all programs.	% beep % noisy
% nodoc % terse	Turns off the documentation that appears when you use Wisconsin Package commands. This documentation may be tedious if you are familiar with the programs or if your connection to the computer is slow.	% doc % verbose
% seqformat staden % seqformat fasta	Sets your programs to accept sequences from files in Staden or FastA format.	% seqformat gcg
% doclines 10	Sets the number of lines of documentation that Wisconsin Package programs copy from input files into output files. The default number of non-blank lines copied is six.	% doclines 6
% modifybatch	Lets you define the time at which programs that accept the -BATch parameter are submitted to the batch queue.	% modifybatch
% noplotcheck	Turns off the report of your current graphics configuration that appears when you run a graphics program.	% plotcheck
% plotterm	Sets your terminal to "NoBroadcast" so that if a plotter is attached to your terminal, it will plot without the confusion of system messages that can destroy the plot. This global switch also sets and verifies that the plotter is connected to the terminal and not some other port.	% noplotterm
% gif* % hpgl % postscript % regis % sixel % tektronix % xwindows	Lets you define the type of graphics output device you want to use and the port to which it is connected. (See "Configuring Graphics Languages and Devices" in Appendix C, Graphics in this manual for descriptions of these devices.)	% gif* % hpgl % postscript % regis % sixel % tektronix % xwindows