| Category | Package | Version | Platform | Categories |
| Accelrys | Cerius2 | 4.8.1 | SGI 5.3+ | Life/Material Science |
| Felix | 2000 | SGI 5.3+ | NMR | |
| InsightII | 2000 | SGI 5.3+ | Life Sciences | |
| Quanta | 2000 | SGI 5.3+ | Life Sciences | |
| Molecular Biology | GCG | 10 | SGI 5.3+ | Genetics |
| Clustal | 1.83 | SGI 5.3+ | Seq. alignement | |
| Cn3D | 2.5 | SGI 5.3+ | Seq. alignement | |
| Modeling | MOE | 2003.02 | SGI 5.3+ and Windows | Life Science modeling, library, QSAR, MM, MD |
| Sybyl | 6.9.1 | SGI 5.3+ | Life Science modeling, library, QSAR,MM, MD | |
| MacroModel | 7 | SGI 5.3+ | MM, MD | |
| Amber | 6.0 | SGI 5.3+, PC | MM, MD | |
| NAMD2 | 2.5 | SGI 5.3+ | MD | |
| DOCK | 4.0 | SGI 5.3+ | Docking | |
| Quantum Mechanics | GAMESS | 2003 | SGI 5.3+ | QM |
| Spartan | 02 | SGI 5.3+ and windows | QM, also provides GUI to Gaussian | |
| Gaussian | 98 | SGI 5.3+ | QM | |
| MOPAC | 7.0 | SGI 5.3 | QM | |
| NMR | X-PLOR | 3.1 | SGI 5.3+ | NMR, X-ray |
| DNMR | 3 | SGI 5.3+ | NMR | |
| CNX | 3h | SGI 5.3+ | X-ray, NMR | |
| Viewers | VMD | 1.8.1 | SGI 5.3+ | Visual MD |
| RasMol | 2.0 | SGI,PC | Molecular Viewer | |
| GRASP | 1.2 | SGI 5.3+ | Surfaces | |
| Molden | 1.2 | SGI 5.3+ | QM results | |
| ANSIG | 3.3 | SGI 5.3+ | NMR results |
